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Bioinformatics Software (107)
DNA Structural Software (6)
Molecular Genetics (29)
Molecular Modeling (35)
Online Services (188)
Software for Genetics (65)
Software for PCR (7)
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  GenoLogics http://www.genologics.com/
Develops data management software solutions for life sciences research. Products include tools for genomics, proteomics, biorepositories, multiple laboratories, systems biology and translational research.
  http://www.geospiza.com/finchtv/ http://www.geospiza.com/finchtv/
Free DNA sequencing chromatogram trace viewer. Runs on Window, MacOS X, Linux and Solaris. Uses QT library.
  Mekentosj software http://www.mekentosj.com/programs/
Free MacOS X programs for molecular biologists. Offers 4Peaks - a DNA sequencing trace viewer, iRNAi - RNAi design, and LabAssistant - lab timer/organizer.
  http://www.bioinformatics.org/JaMBW/ http://www.bioinformatics.org/JaMBW/
Java based biologist's workbench by Luca I.G.Toldo.
  MacVector http://www.macvector.com
Macintosh software which provide sequence editing, primer design, database searching, protein analysis, alignment, phylogeny, and other functions.
  http://www.mekentosj.com/enzymex/ http://www.mekentosj.com/enzymex/
Free MacOS X program for molecular biologists that can be used to determine which restriction enzymes cut a DNA sequence. Includes list of all commercially available RE.
  http://www.ludesi.com http://www.ludesi.com
Analysis software and service for 2D electrophoresis gels as tools for multivariate statistical analysis.
  Molecular Biology Software Links http://www.yk.rim.or.jp/~aisoai/soft.html
Links to biological software for DNA sequencing, molecule modeling, polymerase chain reaction and taxonomy.
  BioKin, Ltd. http://www.biokin.com/
Offers script-driven programming for data analysis in viral dynamics, enzyme kinetics, receptor binding and drug discovery screening. Includes demo download, technical support and contacts for consulting in Pullman, Washington.
  StarBiochem http://web.mit.edu/star/biochem/
StarBiochem is an application that displays molecules from the Protein Data Bank. It allows users to explore fundamental biological research concepts, select parts of the molecule and control how the selected parts are displayed.
  DNA Sequencing Software http://www.nucleics.com/DNA_sequencing_tools/DNA_sequencing_tools.html
software to improve the quality of DNA sequencing traces collected on the ABI 3700 and 3730 DNA sequencers.
  PeakTrace Basecaller http://www.nucleics.com/peaktrace/
A new base caller for ABI DNA sequencers including the 377, 3700, 310, 3100, 3130 and 3730 models. Provides increases in read length of 20 to 100%.
  Insilico Biotechnology http://www.insilico-biotechnology.com/
Offering predictive software tools and services for metabolic engineering and drug discovery. Based in Germany.
  DoMix Scientific Software http://science.do-mix.de/index.php
Offers software for sequence alignment, phylogenetic tree visualization, contig assembly and sequence proof reading
  Phenosystems http://www.phenosystems.com/
Offers the Gensearch software to locate and analyse potential mutation locations.
  Blue Tractor Software http://www.bluetractorsoftware.co.uk
Java based commercial software for DNA and Protein sequence analysis. Demo available.
  SoftZymics http://www.softzymics.com/
Package for statistical analysis of steady-state enzyme kinetic data, and presentation graphics, for Macintosh or Windows based computers. Previews, price and form to order from Princeton, New Jersey.
  http://www.broad.mit.edu/annotation/argo/ http://www.broad.mit.edu/annotation/argo/
Software developed by the Broad Institute for visualizing and manually annotating whole genomes. Free for research and educational users

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